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  5. LOC_Os04g23550

LOC_Os04g23550


Description : basic helix-loop-helix family protein, putative, expressed


Gene families : OG_42_0000609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000609_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g23550
Cluster HCCA clusters: cluster_0005

Target Alias Description ECC score Gene Family Method Actions
A4A49_08252 No alias transcription factor bhlh35 0.02 Orthogroups_2024-Update
A4A49_21428 No alias transcription factor fer-like iron deficiency-induced... 0.02 Orthogroups_2024-Update
At2g28160 No alias Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED... 0.02 Orthogroups_2024-Update
At5g57150 No alias Basic helix-loop-helix (BHLH) DNA-binding superfamily... 0.02 Orthogroups_2024-Update
Bradi5g01900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Brara.C02411.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.02 Orthogroups_2024-Update
Brara.G01353.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.02 Orthogroups_2024-Update
GRMZM2G042895 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G119823 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G081200 No alias FER-like regulator of iron uptake 0.02 Orthogroups_2024-Update
Glyma.17G058600 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G066090.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G066100.1 No alias bHLH-type transcription factor 0.04 Orthogroups_2024-Update
HORVU4Hr1G087590.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os04g31290 No alias helix-loop-helix DNA-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_16489g0010 No alias (at5g57150 : 91.7) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
MA_196775g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_439607g0010 No alias (at1g12860 : 92.4) Encodes ICE2 (Inducer of CBF... 0.02 Orthogroups_2024-Update
MA_733169g0010 No alias (at2g16910 : 90.9) Encodes a basic helix-loop helix... 0.02 Orthogroups_2024-Update
PSME_00012853-RA No alias (at2g16910 : 88.2) Encodes a basic helix-loop helix... 0.02 Orthogroups_2024-Update
PSME_00014660-RA No alias (at2g16910 : 101.0) Encodes a basic helix-loop helix... 0.03 Orthogroups_2024-Update
PSME_00014663-RA No alias (at2g16910 : 103.0) Encodes a basic helix-loop helix... 0.03 Orthogroups_2024-Update
PSME_00048166-RA No alias (at2g16910 : 116.0) Encodes a basic helix-loop helix... 0.02 Orthogroups_2024-Update
Potri.006G074800 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Seita.7G045100.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Seita.7G070000.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.02 Orthogroups_2024-Update
Sobic.004G140000.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.007G051800.1 No alias bHLH-type transcription factor 0.05 Orthogroups_2024-Update
Solyc05g014590 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily... 0.04 Orthogroups_2024-Update
Sopen07g006930 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 94 139
No external refs found!