Coexpression cluster: Cluster_187 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006520 cellular amino acid metabolic process 12.28% (7/57) 5.05 0.0 0.0
GO:0006082 organic acid metabolic process 14.04% (8/57) 4.21 0.0 1e-06
GO:0043436 oxoacid metabolic process 14.04% (8/57) 4.21 0.0 1e-06
GO:0044281 small molecule metabolic process 15.79% (9/57) 3.74 0.0 1e-06
GO:0019752 carboxylic acid metabolic process 14.04% (8/57) 4.23 0.0 1e-06
GO:0140101 catalytic activity, acting on a tRNA 8.77% (5/57) 5.27 0.0 8e-06
GO:0016874 ligase activity 8.77% (5/57) 4.9 1e-06 2.5e-05
GO:0016875 ligase activity, forming carbon-oxygen bonds 7.02% (4/57) 5.53 2e-06 3.5e-05
GO:0004812 aminoacyl-tRNA ligase activity 7.02% (4/57) 5.53 2e-06 3.5e-05
GO:0043038 amino acid activation 7.02% (4/57) 5.53 2e-06 3.5e-05
GO:0043039 tRNA aminoacylation 7.02% (4/57) 5.53 2e-06 3.5e-05
GO:0006418 tRNA aminoacylation for protein translation 7.02% (4/57) 5.62 1e-06 4.1e-05
GO:0006399 tRNA metabolic process 7.02% (4/57) 4.69 1.8e-05 0.000329
GO:0008168 methyltransferase activity 8.77% (5/57) 3.9 2.1e-05 0.000366
GO:0016741 transferase activity, transferring one-carbon groups 8.77% (5/57) 3.84 2.6e-05 0.000422
GO:1901607 alpha-amino acid biosynthetic process 5.26% (3/57) 5.46 4.4e-05 0.000662
GO:0034660 ncRNA metabolic process 7.02% (4/57) 4.31 5e-05 0.000707
GO:0016053 organic acid biosynthetic process 7.02% (4/57) 4.19 7.1e-05 0.000888
GO:0046394 carboxylic acid biosynthetic process 7.02% (4/57) 4.19 7.1e-05 0.000888
GO:0008652 cellular amino acid biosynthetic process 5.26% (3/57) 5.12 9.1e-05 0.001084
GO:1901605 alpha-amino acid metabolic process 5.26% (3/57) 5.09 9.6e-05 0.001093
GO:0140098 catalytic activity, acting on RNA 8.77% (5/57) 3.4 0.000114 0.00124
GO:0009067 aspartate family amino acid biosynthetic process 3.51% (2/57) 6.91 0.000121 0.001257
GO:0044283 small molecule biosynthetic process 7.02% (4/57) 3.91 0.000148 0.001364
GO:0009066 aspartate family amino acid metabolic process 3.51% (2/57) 6.77 0.000148 0.001412
GO:0035639 purine ribonucleoside triphosphate binding 19.3% (11/57) 1.89 0.000146 0.001456
GO:0046483 heterocycle metabolic process 12.28% (7/57) 2.46 0.00027 0.002302
GO:0006725 cellular aromatic compound metabolic process 12.28% (7/57) 2.46 0.00027 0.002302
GO:0005524 ATP binding 17.54% (10/57) 1.91 0.000285 0.002348
GO:1901360 organic cyclic compound metabolic process 12.28% (7/57) 2.43 0.000308 0.002453
GO:0008144 drug binding 17.54% (10/57) 1.82 0.000443 0.003414
GO:0016070 RNA metabolic process 8.77% (5/57) 2.94 0.000494 0.003686
GO:0032555 purine ribonucleotide binding 19.3% (11/57) 1.65 0.000609 0.004409
GO:0017076 purine nucleotide binding 19.3% (11/57) 1.65 0.000633 0.004451
GO:0032553 ribonucleotide binding 19.3% (11/57) 1.64 0.000653 0.004462
GO:0097367 carbohydrate derivative binding 19.3% (11/57) 1.63 0.000704 0.004672
GO:0006139 nucleobase-containing compound metabolic process 10.53% (6/57) 2.4 0.000947 0.006118
GO:1901265 nucleoside phosphate binding 19.3% (11/57) 1.53 0.001221 0.007118
GO:0000166 nucleotide binding 19.3% (11/57) 1.53 0.001221 0.007118
GO:0030554 adenyl nucleotide binding 17.54% (10/57) 1.64 0.001202 0.007364
GO:0032559 adenyl ribonucleotide binding 17.54% (10/57) 1.64 0.001183 0.007441
GO:0004820 glycine-tRNA ligase activity 1.75% (1/57) 9.23 0.001661 0.008632
GO:0006426 glycyl-tRNA aminoacylation 1.75% (1/57) 9.23 0.001661 0.008632
GO:0003879 ATP phosphoribosyltransferase activity 1.75% (1/57) 9.23 0.001661 0.008632
GO:0043168 anion binding 19.3% (11/57) 1.49 0.001525 0.008676
GO:0043167 ion binding 24.56% (14/57) 1.24 0.001714 0.008714
GO:0036094 small molecule binding 19.3% (11/57) 1.48 0.001648 0.009159
GO:0034641 cellular nitrogen compound metabolic process 12.28% (7/57) 1.99 0.001852 0.009222
GO:0090304 nucleic acid metabolic process 8.77% (5/57) 2.49 0.00196 0.009559
GO:0051234 establishment of localization 12.28% (7/57) 1.94 0.002234 0.01047
GO:0006810 transport 12.28% (7/57) 1.94 0.002223 0.010625
GO:0051179 localization 12.28% (7/57) 1.92 0.002386 0.010968
GO:0052689 carboxylic ester hydrolase activity 3.51% (2/57) 4.65 0.002912 0.013133
GO:0016885 ligase activity, forming carbon-carbon bonds 1.75% (1/57) 8.23 0.00332 0.01392
GO:0009086 methionine biosynthetic process 1.75% (1/57) 8.23 0.00332 0.01392
GO:0003989 acetyl-CoA carboxylase activity 1.75% (1/57) 8.23 0.00332 0.01392
GO:0016421 CoA carboxylase activity 1.75% (1/57) 8.23 0.00332 0.01392
GO:0006555 methionine metabolic process 1.75% (1/57) 7.65 0.004976 0.018582
GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase 1.75% (1/57) 7.65 0.004976 0.018582
GO:0008172 S-methyltransferase activity 1.75% (1/57) 7.65 0.004976 0.018582
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity 1.75% (1/57) 7.65 0.004976 0.018582
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity 1.75% (1/57) 7.65 0.004976 0.018582
GO:0008150 biological_process 38.6% (22/57) 0.78 0.004557 0.018778
GO:0009058 biosynthetic process 10.53% (6/57) 1.9 0.005352 0.019093
GO:0005737 cytoplasm 3.51% (2/57) 4.21 0.005274 0.019098
GO:0016021 integral component of membrane 8.77% (5/57) 2.16 0.005236 0.019251
GO:0031224 intrinsic component of membrane 8.77% (5/57) 2.13 0.005634 0.019802
GO:0003824 catalytic activity 33.33% (19/57) 0.86 0.004915 0.019909
GO:0044237 cellular metabolic process 21.05% (12/57) 1.16 0.00617 0.021372
GO:0003674 molecular_function 52.63% (30/57) 0.56 0.006664 0.021522
GO:0009085 lysine biosynthetic process 1.75% (1/57) 7.23 0.006629 0.021703
GO:0009089 lysine biosynthetic process via diaminopimelate 1.75% (1/57) 7.23 0.006629 0.021703
GO:0046451 diaminopimelate metabolic process 1.75% (1/57) 7.23 0.006629 0.021703
GO:0006553 lysine metabolic process 1.75% (1/57) 7.23 0.006629 0.021703
GO:0000097 sulfur amino acid biosynthetic process 1.75% (1/57) 6.91 0.00828 0.026037
GO:0002161 aminoacyl-tRNA editing activity 1.75% (1/57) 6.91 0.00828 0.026037
GO:0004144 diacylglycerol O-acyltransferase activity 1.75% (1/57) 6.65 0.009927 0.029658
GO:0016411 acylglycerol O-acyltransferase activity 1.75% (1/57) 6.65 0.009927 0.029658
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor 1.75% (1/57) 6.65 0.009927 0.029658
GO:0006812 cation transport 5.26% (3/57) 2.78 0.009607 0.029818
GO:0006801 superoxide metabolic process 1.75% (1/57) 6.43 0.011572 0.032926
GO:0072593 reactive oxygen species metabolic process 1.75% (1/57) 6.43 0.011572 0.032926
GO:0000096 sulfur amino acid metabolic process 1.75% (1/57) 6.43 0.011572 0.032926
GO:0043648 dicarboxylic acid metabolic process 1.75% (1/57) 6.43 0.011572 0.032926
GO:1901363 heterocyclic compound binding 24.56% (14/57) 0.92 0.012287 0.033754
GO:0097159 organic cyclic compound binding 24.56% (14/57) 0.92 0.012287 0.033754
GO:0044249 cellular biosynthetic process 8.77% (5/57) 1.86 0.01222 0.03436
GO:0052803 imidazole-containing compound metabolic process 1.75% (1/57) 6.23 0.013215 0.035093
GO:0006547 histidine metabolic process 1.75% (1/57) 6.23 0.013215 0.035093
GO:0000105 histidine biosynthetic process 1.75% (1/57) 6.23 0.013215 0.035093
GO:1901576 organic substance biosynthetic process 8.77% (5/57) 1.78 0.014915 0.038329
GO:0016763 transferase activity, transferring pentosyl groups 1.75% (1/57) 6.06 0.014855 0.03859
GO:0044425 membrane part 8.77% (5/57) 1.79 0.014715 0.038647
GO:0005575 cellular_component 17.54% (10/57) 1.11 0.015737 0.040013
GO:0004045 aminoacyl-tRNA hydrolase activity 1.75% (1/57) 5.91 0.016492 0.04149
GO:0008312 7S RNA binding 1.75% (1/57) 5.77 0.018126 0.044661
GO:0048500 signal recognition particle 1.75% (1/57) 5.77 0.018126 0.044661
GO:0008610 lipid biosynthetic process 3.51% (2/57) 3.27 0.018442 0.044976
GO:0008152 metabolic process 26.32% (15/57) 0.81 0.018982 0.045826
GO:0006811 ion transport 5.26% (3/57) 2.4 0.019326 0.046188
GO:0033036 macromolecule localization 3.51% (2/57) 3.18 0.020713 0.046266
GO:0008104 protein localization 3.51% (2/57) 3.18 0.020713 0.046266
GO:0045184 establishment of protein localization 3.51% (2/57) 3.19 0.020423 0.046487
GO:0009987 cellular process 21.05% (12/57) 0.93 0.020229 0.046489
GO:0015031 protein transport 3.51% (2/57) 3.2 0.020135 0.04672
GO:0042886 amide transport 3.51% (2/57) 3.2 0.020135 0.04672
GO:0015833 peptide transport 3.51% (2/57) 3.2 0.020135 0.04672
GO:0044255 cellular lipid metabolic process 3.51% (2/57) 3.15 0.021593 0.047785
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum lycopersicum HCCA clusters Cluster_43 0.036 Orthogroups_2024-Update Compare
Solanum lycopersicum HCCA clusters Cluster_108 0.02 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_37 0.023 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_71 0.019 Orthogroups_2024-Update Compare
Solanum pennellii HCCA clusters Cluster_243 0.025 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_72 0.02 Orthogroups_2024-Update Compare
Arabidopsis thaliana HCCA clusters Cluster_222 0.02 Orthogroups_2024-Update Compare
Chlamydomonas reinhardtii HCCA clusters Cluster_12 0.033 Orthogroups_2024-Update Compare
Klebsormidium nitens HCCA clusters Cluster_129 0.02 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_3 0.021 Orthogroups_2024-Update Compare
Picea abies HCCA clusters Cluster_55 0.02 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_37 0.031 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_137 0.026 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_189 0.023 Orthogroups_2024-Update Compare
Physcomitrella patens HCCA clusters Cluster_249 0.024 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_5 0.021 Orthogroups_2024-Update Compare
Porphyridium purpureum HCCA clusters Cluster_48 0.02 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_140 0.025 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_204 0.025 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_209 0.024 Orthogroups_2024-Update Compare
Selaginella moellendorffii HCCA clusters Cluster_210 0.028 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_89 0.024 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_119 0.025 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_129 0.025 Orthogroups_2024-Update Compare
Brachypodium distachyon HCCA clusters Cluster_204 0.022 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_417 0.021 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_433 0.023 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_524 0.02 Orthogroups_2024-Update Compare
Glycine max HCCA clusters Cluster_535 0.02 Orthogroups_2024-Update Compare
Cyanophora paradoxa HCCA clusters Cluster_23 0.02 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_65 0.028 Orthogroups_2024-Update Compare
Zea mays HCCA clusters Cluster_190 0.026 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0050 0.027 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0073 0.021 Orthogroups_2024-Update Compare
Populus trichocarpa HCCA clusters cluster_0102 0.02 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_57 0.029 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_66 0.021 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_113 0.025 Orthogroups_2024-Update Compare
Brassica rapa HCAA Clusters Cluster_344 0.02 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_45 0.036 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_74 0.025 Orthogroups_2024-Update Compare
Hordeum vulgare HCAA Clusters Cluster_113 0.022 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_1 0.028 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_6 0.022 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_63 0.03 Orthogroups_2024-Update Compare
Sorghum bicolor HCAA Clusters Cluster_129 0.024 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_33 0.053 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_34 0.024 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_130 0.02 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_163 0.025 Orthogroups_2024-Update Compare
Setaria italica HCAA Clusters Cluster_237 0.02 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_106 0.028 Orthogroups_2024-Update Compare
Marchantia polymorpha HCAA Clusters Cluster_140 0.02 Orthogroups_2024-Update Compare
Sequences (57) (download table)

InterPro Domains

GO Terms

Family Terms